Workflow: extract_readgroups_bam.cwl

Fetched 2021-06-17 01:10:13 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
readgroups_bam_uuid https://w3id.org/cwl/view/git/963f6d502da2c4f152c1654e94008ccf8f6d0db3/tools/readgroup.yml#readgroups_bam_uuid
bioclient_config File

Steps

ID Runs Label Doc
emit_readgroups_bam_file
../../tools/emit_readgroups_bam_file.cwl (ExpressionTool)
extract_bam
../../tools/bio_client_download.cwl (CommandLineTool)

Outputs

ID Type Label Doc
output https://w3id.org/cwl/view/git/963f6d502da2c4f152c1654e94008ccf8f6d0db3/tools/readgroup.yml#readgroups_bam_file
Permalink: https://w3id.org/cwl/view/git/963f6d502da2c4f152c1654e94008ccf8f6d0db3/workflows/mirnaseq_automation/extract_readgroups_bam.cwl