Workflow: unix_align_workflow.cwl
Fetched 2023-01-12 09:06:11 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam_path | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| align |
../../tools/unix/unix_align_cmd.cwl
(CommandLineTool)
|
||
| merge |
../../tools/unix/unix_merge_cmd.cwl
(CommandLineTool)
|
||
| bamtofastq |
../../tools/unix/unix_bamtofastq_cmd.cwl
(CommandLineTool)
|
||
| bamtoreadgroup |
../../tools/unix/unix_bamreadgroup_cmd.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| merged_bam | File |
Permalink:
https://w3id.org/cwl/view/git/6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf/workflows/unix/unix_align_workflow.cwl
