Workflow: extract_readgroups_bam.cwl
Fetched 2023-01-12 09:04:24 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bioclient_config | File | ||
| readgroups_bam_uuid | https://w3id.org/cwl/view/git/6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf/tools/readgroup.yml#readgroups_bam_uuid |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| extract_bam |
../../tools/bio_client_download.cwl
(CommandLineTool)
|
||
| emit_readgroups_bam_file |
../../tools/emit_readgroups_bam_file.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | https://w3id.org/cwl/view/git/6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf/tools/readgroup.yml#readgroups_bam_file |
Permalink:
https://w3id.org/cwl/view/git/6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf/workflows/bamfastq_align/extract_readgroups_bam.cwl
