Workflow: status_postgres.cwl
Fetched 2023-01-04 02:30:38 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| status | String | ||
| db_cred | File | ||
| hostname | String | ||
| job_uuid | String | ||
| step_token | File | ||
| status_table | String | ||
| thread_count | Long | ||
| host_ipaddress | String | ||
| db_cred_section | String | ||
| host_macaddress | String | ||
| cwl_job_git_hash | String | ||
| cwl_job_git_repo | String | ||
| cwl_job_rel_path | String | ||
| input_bam_gdc_id | String | ||
| input_bam_md5sum | String | ||
| indexd_sqlite_uuid | String | ||
| input_bam_file_size | Long | ||
| slurm_resource_cores | Long | ||
| cwl_workflow_git_hash | String | ||
| cwl_workflow_git_repo | String | ||
| cwl_workflow_rel_path | String | ||
| slurm_resource_mem_megabytes | Long | ||
| slurm_resource_disk_gigabytes | Long |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| emit_json |
../../tools/emit_json.cwl
(ExpressionTool)
|
||
| json_to_sqlite |
../../tools/json_to_sqlite.cwl
(CommandLineTool)
|
||
| sqlite_to_postgres |
../../tools/sqlite_to_postgres_hirate.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| token | File |
Permalink:
https://w3id.org/cwl/view/git/3cd06184444bb85e9773a3e7dc548c6dd3bdaccb/workflows/fastq_readgroup_stats/status_postgres.cwl
