Workflow: etl.cwl
Fetched 2023-01-04 02:27:16 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| job_uuid | String | ||
| start_token | File | ||
| thread_count | Long | ||
| bioclient_config | File | ||
| input_bam_gdc_id | String | ||
| input_bam_file_size | Long | ||
| bioclient_load_bucket | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| transform |
transform.cwl
(Workflow)
|
||
| extract_bam |
../../tools/bio_client_download.cwl
(CommandLineTool)
|
||
| load_sqlite |
../../tools/bio_client_upload_pull_uuid.cwl
(CommandLineTool)
|
||
| emit_sqlite_uuid |
../../tools/emit_json_value.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| indexd_sqlite_uuid | String |
Permalink:
https://w3id.org/cwl/view/git/3cd06184444bb85e9773a3e7dc548c6dd3bdaccb/workflows/fastq_readgroup_stats/etl.cwl
