- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bam | File | ||
fasta | File | ||
job_uuid | String | ||
input_state | String | ||
amplicon_kit_set_file | https://w3id.org/cwl/view/git/3cd06184444bb85e9773a3e7dc548c6dd3bdaccb/tools/amplicon_kit.yml#amplicon_kit_set_file |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
picard_collecttargetedpcrmetrics |
../../tools/picard_collecttargetedpcrmetrics.cwl
(CommandLineTool)
|
||
picard_collecttargetedpcrmetrics_to_sqlite |
../../tools/picard_collecttargetedpcrmetrics_to_sqlite.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/3cd06184444bb85e9773a3e7dc548c6dd3bdaccb/workflows/bamfastq_align/amplicon_metrics.cwl