Workflow: amplicon_metrics.cwl
Fetched 2023-01-12 04:52:29 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam | File | ||
| fasta | File | ||
| job_uuid | String | ||
| input_state | String | ||
| amplicon_kit_set_file | https://w3id.org/cwl/view/git/3cb464a3a5c39cc060cd23d9c60918bc9ffb169b/tools/amplicon_kit.yml#amplicon_kit_set_file |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| picard_collecttargetedpcrmetrics |
../../tools/picard_collecttargetedpcrmetrics.cwl
(CommandLineTool)
|
||
| picard_collecttargetedpcrmetrics_to_sqlite |
../../tools/picard_collecttargetedpcrmetrics_to_sqlite.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/3cb464a3a5c39cc060cd23d9c60918bc9ffb169b/workflows/bamfastq_align/amplicon_metrics.cwl
