Workflow: exome_metrics.cwl
Fetched 2023-01-04 10:17:46 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam | File | ||
| fasta | File | ||
| job_uuid | String | ||
| input_state | String | ||
| capture_kit_set_file | https://w3id.org/cwl/view/git/18affdd927cc388fab2c113dc2ec6df782af2a52/tools/capture_kit.yml#capture_kit_set_file |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| picard_collecthsmetrics |
../../tools/picard_collecthsmetrics.cwl
(CommandLineTool)
|
||
| picard_collecthsmetrics_to_sqlite |
../../tools/picard_collecthsmetrics_to_sqlite.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/18affdd927cc388fab2c113dc2ec6df782af2a52/workflows/bamfastq_align/exome_metrics.cwl
