Workflow: BLASTP, parse, dump FASTA
Fetched 2025-05-09 10:29:45 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| user_query | File | ||
| user_db_dir | Directory (Optional) | ||
| user_search_db | String | ||
| user_length_flag | Integer | ||
| user_outfmt_flag | String | ||
| user_target_flag | Boolean (Optional) | ||
| user_idsonly_flag | Integer | ||
| user_percent_flag | Float | ||
| user_fasta_results | File | ||
| user_parse_results | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| blast_step |
blastp_docker.cwl
(CommandLineTool)
|
BLASTP search. | |
| blastdbcmd_step |
blastdbcmd_docker.cwl
(CommandLineTool)
|
Blastdbcmd to dump seqs/info. | |
| parse_blast_step |
parse_blast_report.cwl
(CommandLineTool)
|
Parses BLAST tabular. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_out_class | File |
Permalink:
https://w3id.org/cwl/view/git/9cf84946390112ca1f27347ee2a90a370a92a4a2/blast-pipelines/simple_three_step.cwl
