Workflow: BlastP_RBH_workflow
Fetched 2023-01-13 21:39:21 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| user_db_dir | Directory | ||
| user_query1 | File | ||
| user_query2 | File | ||
| user_db_flag | String | ||
| user_out_flag1 | String | ||
| user_out_flag2 | String | ||
| user_out_results | String | ||
| user_outfmt_flag | String | ||
| user_taxid_flag1 | String | ||
| user_taxid_flag2 | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| rbh_python |
python_step.cwl
(CommandLineTool)
|
Process two tabular BLAST outputs and return RBHs |
Process two tabular BLAST outputs and return RBHs |
| blast_step1 |
blastp_docker.cwl
(CommandLineTool)
|
BLASTP search. | |
| blast_step2 |
blastp_docker.cwl
(CommandLineTool)
|
BLASTP search. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_out_class | File |
Permalink:
https://w3id.org/cwl/view/git/9cf84946390112ca1f27347ee2a90a370a92a4a2/blast-pipelines/blast_workflow.cwl
