Workflow: workflow.cwl
Fetched 2023-01-09 12:04:23 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| PATH | String[] | ||
| tree | String[] | ||
| managePy_Path | String | ||
| cds_fasta_name | String[] | ||
| scientific_name | String[] | ||
| deepPATH_analyses | String[] | ||
| genome_fasta_name | String[] | ||
| protein_fasta_name | String[] | ||
| transcript_fasta_name | String[] | ||
| deepPATH_genomic_fasta | String[] | ||
| blastdb_Path_production | String[] | ||
| hmmerdb_Path_production | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| writeYml |
writeYml.cwl
(CommandLineTool)
|
||
| create_yml |
create_yml.cwl
(CommandLineTool)
|
||
| writeFirstLine |
writeFirstLine.cwl
(CommandLineTool)
|
||
| writeYml-protein-fasta |
writeYml-protein-fasta.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| Yml_file | File |
Permalink:
https://w3id.org/cwl/view/git/7562bd2c6900b30bce6c6f78951cd76d28218f47/flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl
