Workflow: workflow.cwl
Fetched 2025-09-28 09:41:26 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| PATH | String[] | ||
| tree | String[] | ||
| in_seq | Directory | ||
| in_dummy | File | ||
| in_names | Directory | ||
| gap_lines | File | ||
| in_tracks | Directory | ||
| in_cds_fasta | File | ||
| in_gc_bigwig | File | ||
| original_gff | File | ||
| processed_gff | File (Optional) | ||
| in_gaps_bigwig | File (Optional) | ||
| in_tracks_conf | File | ||
| url_table_file | String[] | ||
| deepPATH_bigwig | String[] | ||
| in_genomic_fasta | File | ||
| in_protein_fasta | File | ||
| deepPATH_analyses | String[] | ||
| in_trackList_json | File | ||
| in_assembly_readme | File | ||
| in_transcript_fasta | File | ||
| deepPATH_apollo2_data | String[] | ||
| in_trackList_json_bak | File | ||
| deepPATH_genomic_fasta | String[] | ||
| in_genePrediction_readme | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| cp_seq |
cp_dir.cwl
(CommandLineTool)
|
||
| cp_names |
cp_dir.cwl
(CommandLineTool)
|
||
| cp_tracks |
cp_dir.cwl
(CommandLineTool)
|
||
| cp_cds_fasta |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
| cp_gc_bigwig |
cp_file.cwl
(CommandLineTool)
|
||
| cp_gaps_bigwig |
cp_file.cwl
(CommandLineTool)
|
||
| cp_tracks_conf |
cp_file.cwl
(CommandLineTool)
|
||
| cp_genomic_fasta |
cp_file.cwl
(CommandLineTool)
|
||
| cp_protein_fasta |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
| cp_trackList_json |
cp_file.cwl
(CommandLineTool)
|
||
| cp_assembly_readme |
cp_file.cwl
(CommandLineTool)
|
||
| cp_transcript_fasta |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
| cp_trackList_json_bak |
cp_file.cwl
(CommandLineTool)
|
||
| cp_original_genomic_gff |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
| cp_annotated_genomic_gff |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
| cp_genePrediction_readme |
cp_file_4_annotation.cwl
(CommandLineTool)
|
Outputs
There are no outputs in this workflow
Permalink:
https://w3id.org/cwl/view/git/6f0888f9e4b15172109dcb1db2ee63f154a79100/flow_dispatch/2other_species/workflow.cwl
