- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
PATH | String[] | ||
tree | String[] | ||
in_seq | Directory | ||
in_dummy | File | ||
in_names | Directory | ||
gap_lines | File | ||
in_tracks | Directory | ||
in_cds_fasta | File | ||
in_gc_bigwig | File | ||
in_gaps_bigwig | File (Optional) | ||
in_genomic_gff | File | ||
in_tracks_conf | File | ||
deepPATH_bigwig | String[] | ||
in_genomic_fasta | File | ||
in_protein_fasta | File | ||
deepPATH_analyses | String[] | ||
in_trackList_json | File | ||
in_assembly_readme | File | ||
in_transcript_fasta | File | ||
deepPATH_apollo2_data | String[] | ||
in_trackList_json_bak | File | ||
deepPATH_genomic_fasta | String[] | ||
in_genePrediction_readme | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
cp_seq |
cp_dir.cwl
(CommandLineTool)
|
||
cp_names |
cp_dir.cwl
(CommandLineTool)
|
||
cp_tracks |
cp_dir.cwl
(CommandLineTool)
|
||
cp_cds_fasta |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
cp_gc_bigwig |
cp_file.cwl
(CommandLineTool)
|
||
cp_gaps_bigwig |
cp_file.cwl
(CommandLineTool)
|
||
cp_genomic_gff |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
cp_tracks_conf |
cp_file.cwl
(CommandLineTool)
|
||
cp_genomic_fasta |
cp_file.cwl
(CommandLineTool)
|
||
cp_protein_fasta |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
cp_trackList_json |
cp_file.cwl
(CommandLineTool)
|
||
cp_assembly_readme |
cp_file.cwl
(CommandLineTool)
|
||
cp_transcript_fasta |
cp_file_4_annotation.cwl
(CommandLineTool)
|
||
cp_trackList_json_bak |
cp_file.cwl
(CommandLineTool)
|
||
cp_genePrediction_readme |
cp_file_4_annotation.cwl
(CommandLineTool)
|
Outputs
There are no outputs in this workflow
Permalink:
https://w3id.org/cwl/view/git/677d79c721ad5f7a7e09b693d7f3fe2da70826e2/flow_dispatch/2other_species/workflow.cwl