Workflow: MoveData-workflow.cwl
Fetched 2023-01-04 16:38:22 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| PATH | String[] | ||
| tree | String[] | ||
| Gmod_account | String | ||
| managePy_Path | String | ||
| Apollo_account | String | ||
| cds_fasta_name | String[] | ||
| deepPATH_bigwig | String[] | ||
| host_production | String[] | ||
| scientific_name | String[] | ||
| deepPATH_analyses | String[] | ||
| genome_fasta_name | String[] | ||
| Gmod_stage_account | String | ||
| protein_fasta_name | String[] | ||
| deepPATH_apollo2_data | String[] | ||
| transcript_fasta_name | String[] | ||
| deepPATH_genomic_fasta | String[] | ||
| blastdb_Path_production | String[] | ||
| hmmerdb_Path_production | String[] | ||
| login_apollo2_production | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| createFolder |
files_4_Apollo2Server/MoveData/createFolder.cwl
(CommandLineTool)
|
||
| create_ymlFile | |||
| dataTransfer-blat |
files_4_Apollo2Server/MoveData/dataTransfer-blat.cwl
(CommandLineTool)
|
||
| dataTransfer-bigwig |
files_4_Apollo2Server/MoveData/dataTransfer-bigwig.cwl
(CommandLineTool)
|
||
| dataTransfer-jbrowse |
files_4_Apollo2Server/MoveData/dataTransfer-jbrowse.cwl
(CommandLineTool)
|
||
| createFolder-2gmodProd |
files_4_Apollo2Server/MoveData/createFolder-2gmod.cwl
(CommandLineTool)
|
||
| createFolder-2gmodStage |
files_4_Apollo2Server/MoveData/createFolder-2gmod.cwl
(CommandLineTool)
|
||
| dataTransfer-scaffold-2apollo |
files_4_Apollo2Server/MoveData/dataTransfer-scaffold-2apollo.cwl
(CommandLineTool)
|
||
| dataTransfer-scaffold-2gmodProd |
files_4_Apollo2Server/MoveData/dataTransfer-scaffold-2gmod.cwl
(CommandLineTool)
|
||
| dataTransfer-scaffold-2gmodStage |
files_4_Apollo2Server/MoveData/dataTransfer-scaffold-2gmod.cwl
(CommandLineTool)
|
||
| dataTransfer-working_files-2apollo |
files_4_Apollo2Server/MoveData/dataTransfer-working_files-2apollo.cwl
(CommandLineTool)
|
||
| dataTransfer-working_files-2gmodProd |
files_4_Apollo2Server/MoveData/dataTransfer-working_files-2gmod.cwl
(CommandLineTool)
|
||
| dataTransfer-working_files-2gmodStage |
files_4_Apollo2Server/MoveData/dataTransfer-working_files-2gmod.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| Yml_file | File |
Permalink:
https://w3id.org/cwl/view/git/677d79c721ad5f7a7e09b693d7f3fe2da70826e2/MoveData-workflow.cwl
