MoveData-workflow.cwl - Common Workflow Language Viewer

Workflow: MoveData-workflow.cwl

Fetched 2023-01-09 20:02:45 GMT

Verified with cwltool version 3.1.20221201130942

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Inputs

ID	Type	Title	Doc
PATH	String[]
tree	String[]
Gmod_account	String
managePy_Path	String
Apollo_account	String
cds_fasta_name	String[]
deepPATH_bigwig	String[]
host_production	String[]
scientific_name	String[]
deepPATH_analyses	String[]
genome_fasta_name	String[]
Gmod_stage_account	String
protein_fasta_name	String[]
deepPATH_apollo2_data	String[]
transcript_fasta_name	String[]
deepPATH_genomic_fasta	String[]
blastdb_Path_production	String[]
hmmerdb_Path_production	String[]
login_apollo2_production	String[]

Steps

ID	Runs	Label	Doc
createFolder	files_4_Apollo2Server/MoveData/createFolder.cwl (CommandLineTool)
create_ymlFile	flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl (Workflow)
dataTransfer-blat	files_4_Apollo2Server/MoveData/dataTransfer-blat.cwl (CommandLineTool)
dataTransfer-bigwig	files_4_Apollo2Server/MoveData/dataTransfer-bigwig.cwl (CommandLineTool)
dataTransfer-jbrowse	files_4_Apollo2Server/MoveData/dataTransfer-jbrowse.cwl (CommandLineTool)
createFolder-2gmodProd	files_4_Apollo2Server/MoveData/createFolder-2gmod.cwl (CommandLineTool)
createFolder-2gmodStage	files_4_Apollo2Server/MoveData/createFolder-2gmod.cwl (CommandLineTool)
dataTransfer-scaffold-2gmodProd	files_4_Apollo2Server/MoveData/dataTransfer-scaffold-2gmod.cwl (CommandLineTool)
dataTransfer-scaffold-2gmodStage	files_4_Apollo2Server/MoveData/dataTransfer-scaffold-2gmod.cwl (CommandLineTool)

Outputs

ID	Type	Label	Doc
Yml_file	File

Permalink: https://w3id.org/cwl/view/git/0b58c250e8ab7c5efae29443f08ea74316127041/MoveData-workflow.cwl