Workflow: apollo2-workflow.cwl
Fetched 2023-01-12 09:15:04 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| in_gff | File | ||
| in_tree | String[] | ||
| in_fasta | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| ln |
block_ln/ln.cwl
(CommandLineTool)
|
||
| tree |
block_tree/tree.cwl
(CommandLineTool)
|
creating directory tree | |
| faToTwoBit |
block_faToTwoBit/faToTwoBit.cwl
(CommandLineTool)
|
||
| gap2bigwig |
block_gap2bigwig/gap2bigwig.cwl
(CommandLineTool)
|
||
| add_metadata |
block_add_metadata/add_metadata.cwl
(CommandLineTool)
|
||
| generate-names |
block_generate-names/generate-names.cwl
(CommandLineTool)
|
||
| samtools_faidx |
block_samtools_faidx/samtools_faidx.cwl
(CommandLineTool)
|
||
| add-bw-track_gc |
block_add-bw-track_gc/add-bw-track_gc.cwl
(CommandLineTool)
|
||
| prepare-refseqs |
block_prepare-refseqs/prepare-refseqs.cwl
(CommandLineTool)
|
||
| GCcontent2bigwig |
block_GCcontent2bigwig/GCcontent2bigwig.cwl
(CommandLineTool)
|
||
| flatfile-to-json |
block_flatfile-to-json/flatfile-to-json.cwl
(CommandLineTool)
|
||
| add-bw-track_gaps |
block_add-bw-track_gaps/add-bw-track_gaps.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| final_dir | Directory |
Permalink:
https://w3id.org/cwl/view/git/263fb1af2bb9b831c67097404dbd39adf1254666/flow_apollo2/apollo2-workflow.cwl
