Workflow: qsm_pipeline_v1.cwl
Fetched 2023-05-02 11:33:36 GMT
Verified with cwltool version 3.1.20230201224320
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Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| zipFile | String | ||
| brainProbMask | File | ||
| brainTemplate | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| brain_mask |
09_brainMask.cwl
(CommandLineTool)
|
||
| compute_QSM |
11_computeQSM.cwl
(CommandLineTool)
|
||
| compute_RDF |
10_computeRDF.cwl
(CommandLineTool)
|
||
| unzip_files |
01_unzip.cwl
(CommandLineTool)
|
||
| convert_nifti |
02_convertNifti.cwl
(CommandLineTool)
|
||
| laplacian_sum |
07_laplacianSum.cwl
(CommandLineTool)
|
||
| compute_R2star |
12_computeR2star.cwl
(CommandLineTool)
|
||
| phase_gradient |
08_phaseGradient.cwl
(CommandLineTool)
|
||
| phase_Laplacian |
06_phaseLaplacian.cwl
(CommandLineTool)
|
||
| concatenate_echoes |
03_concatenateEchoes.cwl
(CommandLineTool)
|
||
| extract_ROI_values |
13_extractROIvalues.cwl
(CommandLineTool)
|
||
| brain_extraction_reg |
04_brainExtractionAndRegistration.cwl
(CommandLineTool)
|
||
| phase_Laplacian_error |
05_phaseLaplacianError.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| QSM | File | ||
| R2star | File | ||
| QSM_ROIvals | File | ||
| R2star_ROIvals | File |
Permalink:
https://w3id.org/cwl/view/git/882e36d61371650b06fe1a839a84c488ccdcf77f/qsm_pipeline_v1.cwl
