Compute average of average per cross-mapped famil(y)ies

Workflow: Compute average of average per cross-mapped famil(y)ies

Fetched 2023-01-18 13:11:40 GMT

Verified with cwltool version 3.1.20221201130942

Compute average structure for all averaged structures corresponding to UniProt domain instances cross-mapped from Pfam/CATH to a CATH/Pfam family. First computes average per UniProt domain instance and then average all averaged structures per Pfam family.

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This workflow is Open Source and may be reused according to the terms of: https://raw.githubusercontent.com/HrishiDhondge/CroMaSt/9f3832867eab6c7a6363f8ca594a4bcf2ff7e96f/LICENSE

Note that the tools invoked by the workflow may have separate licenses.

Inputs

ID	Type	Title	Doc
pdb_dir	Directory	The directory with (or to store) PDB files
crossmap_file	File[] [JSON]	CATH cross-mapped domin StIs family-wise

Steps

ID	Runs	Label	Doc
chop_and_avg_from_list	7677224c41f8f725af36313dd8565c91 (Workflow)

Outputs

ID	Type	Label	Doc
averaged_structs	File[] [PDB]	Average structures per passed family with given StIs

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Permalink: https://w3id.org/cwl/view/git/9f3832867eab6c7a6363f8ca594a4bcf2ff7e96f/Tools/other_avg_subwf.cwl