Workflow: wf-alignment.cwl

Fetched 2022-01-20 14:10:04 GMT
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Inputs

ID Type Title Doc
alignment_rec https://w3id.org/cwl/view/git/7c46d5c6ef6501dc0e07a9b740e9de64ffec83f5/somatic/somatic-workflow/wf-alignment.cwl#alignment_rec/alignment_rec

Steps

ID Runs Label Doc
prep_align_inputs
steps/prep_align_inputs.cwl (CommandLineTool)
merge_split_alignments
steps/merge_split_alignments.cwl (CommandLineTool)
process_alignment
steps/process_alignment.cwl (CommandLineTool)

Outputs

ID Type Label Doc
work_bam_plus__sr File (Optional)
hla__fastq File[] (Optional)
work_bam_plus__disc File (Optional)
config__algorithm__rawumi_avg_cov Integer (Optional)
align_bam File (Optional)
umi_bam File (Optional)
Permalink: https://w3id.org/cwl/view/git/7c46d5c6ef6501dc0e07a9b740e9de64ffec83f5/somatic/somatic-workflow/wf-alignment.cwl