Workflow: wf-alignment.cwl
Fetched 2023-01-12 05:37:40 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| alignment_rec | https://w3id.org/cwl/view/git/0eecb30ff25047ce354061993e96aaa84fd017d5/somatic/somatic-workflow/wf-alignment.cwl#alignment_rec/alignment_rec |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| prep_align_inputs |
steps/prep_align_inputs.cwl
(CommandLineTool)
|
||
| process_alignment |
steps/process_alignment.cwl
(CommandLineTool)
|
||
| merge_split_alignments |
steps/merge_split_alignments.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| umi_bam | File (Optional) | ||
| align_bam | File (Optional) | ||
| hla__fastq | File[] (Optional) | ||
| work_bam_plus__sr | File (Optional) | ||
| work_bam_plus__disc | File (Optional) | ||
| config__algorithm__rawumi_avg_cov | Integer (Optional) |
Permalink:
https://w3id.org/cwl/view/git/0eecb30ff25047ce354061993e96aaa84fd017d5/somatic/somatic-workflow/wf-alignment.cwl
