Workflow: Gz_Fasta_GC_TRF_CpG.cwl

Fetched 2022-01-20 14:35:24 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
maxperiod String
data_file String
dataformat String
minscore String
masked_sequence String
match String
delta String
accession String
outformat String
script File
window_size String
omittail String
suppress_html String
mismatch String
PI String
singlefile String
flanking_sequence String
step String
PM String

Steps

ID Runs Label Doc
TRFdat_to_bed
../tools/trfdat_to_bed.cwl (CommandLineTool)
gz
../tools/curl_ftp.cwl (CommandLineTool)
TRF
../tools/trf.cwl (CommandLineTool)
wgs_url
../tools/gz_url.cwl (CommandLineTool)
CpG
../tools/cpg.cwl (CommandLineTool)
GC
../tools/GC_analysis.cwl (CommandLineTool)
Fasta
../tools/gz.cwl (CommandLineTool)

Outputs

ID Type Label Doc
TRF_mask_out File
TRF_dat_out File
TRF_bed_out File
GCout File
CpG_out File
fasta_out File
Permalink: https://w3id.org/cwl/view/git/7b727e3a82654a4f102d735fb0b2c4ab12470ff6/workflow/Gz_Fasta_GC_TRF_CpG.cwl