Workflow: Gz_Fasta_GC_TRF_CpG.cwl
Fetched 2023-01-12 00:52:56 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| PI | String | ||
| PM | String | ||
| step | String | ||
| delta | String | ||
| match | String | ||
| script | File | ||
| minscore | String | ||
| mismatch | String | ||
| omittail | String | ||
| accession | String | ||
| data_file | String | ||
| maxperiod | String | ||
| outformat | String | ||
| dataformat | String | ||
| singlefile | String | ||
| window_size | String | ||
| suppress_html | String | ||
| masked_sequence | String | ||
| flanking_sequence | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| GC |
../tools/GC_analysis.cwl
(CommandLineTool)
|
||
| gz |
../tools/curl_ftp.cwl
(CommandLineTool)
|
||
| CpG |
../tools/cpg.cwl
(CommandLineTool)
|
||
| TRF |
../tools/trf.cwl
(CommandLineTool)
|
||
| Fasta |
../tools/gz.cwl
(CommandLineTool)
|
||
| wgs_url |
../tools/gz_url.cwl
(CommandLineTool)
|
||
| TRFdat_to_bed |
../tools/trfdat_to_bed.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| GCout | File | ||
| CpG_out | File | ||
| fasta_out | File | ||
| TRF_bed_out | File | ||
| TRF_dat_out | File | ||
| TRF_mask_out | File |
Permalink:
https://w3id.org/cwl/view/git/e791da56f9d0699653b8231132aeb98b1df90a9d/workflow/Gz_Fasta_GC_TRF_CpG.cwl
