Workflow: qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
table | File | ||
rep_seqs | File | ||
classifier | File | ||
sample_metadata | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
taxa_barplot |
qiime2-step2-deblur.cwl#taxa-barplot.cwl
(CommandLineTool)
|
qiime2: Produce an interactive barplot visualization of taxonomies | |
classify_features |
qiime2-step2-deblur.cwl#feature-classifier-classify-sklearn.cwl
(CommandLineTool)
|
qiime2: Classify reads by taxon using a fitted classifier | |
tabulate_metadata |
qiime2-step2-deblur.cwl#metadata-tabulate.cwl
(CommandLineTool)
|
qiime2: Generate a tabular view of metadata |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
taxa_barplot_file | File | ||
taxonomy_artifact | File | ||
taxonomy_visualization_file | File |
Permalink:
https://w3id.org/cwl/view/git/ef08cb00bd55b4c712645d171dbc691e01ed6165/packed/qiime2-step2-deblur.cwl?part=qiime2-08-taxonomic-analysis.cwl