Workflow: qiime2 create feature visual summaries
Fetched 2024-11-21 09:42:08 GMT
Verified with cwltool version 3.1.20230201224320
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
- Selected
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- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| sample_metadata | File | ||
| rep_seqs_artifact | File | ||
| feature_table_artifact | File | ||
| feature_table_summary_filename | String | ||
| feature_table_tabulation_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| feature_table_summarize |
qiime2-step2-deblur.cwl#feature-table-summarize.cwl
(CommandLineTool)
|
qiime2: Generate visual and tabular summaries of a feature table | |
| feature_table_tabulation |
qiime2-step2-deblur.cwl#feature-table-tabulate-seqs.cwl
(CommandLineTool)
|
qiime2: Generate tabular view of feature identifier to sequence mapping, including links to BLAST each sequence against the NCBI nt database |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| feature_table_summarize_visualization | File | ||
| feature_table_tabulation_visualization | File |
Permalink:
https://w3id.org/cwl/view/git/777dbcd05b5d115371dcda6d54ebaf75dae8afb8/packed/qiime2-step2-deblur.cwl?part=qiime2-04-features.cwl
