CWL Workflow: steps.cwl

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Inputs

ID	Type	Title	Doc
k	String
margin	String
matrix	File
num_bin	String
pattern	String
runPCAR	File
verbose	String
barcodes	File
clip_max	String
features	File
minCells	Integer
runTSNER	File
runUmapR	File
loadDataR	File
block_size	String
loess_span	String
scaleDataR	File
filterDataR	File
minFeatures	Integer
projectName	String
clusterDataR	File
nCountRNAmax	String
nCountRNAmin	String
num_features	String
percentMTmax	String
percentMTmin	String
running_step	Integer
scale_factor	String
find_markersR	File
binning_method	String
findNeighborsR	File
nFeatureRNAmax	String
nFeatureRNAmin	String
normalizeDataR	File
neighbors_method	String
selection_method	String
normalization_method	String
featureSelectionDataR	File

ID	Runs	Label	Doc
runPCA	tools/6_PCA.cwl (CommandLineTool)
runTSNE	tools/10_runTSNE.cwl (CommandLineTool)
runUMAP	tools/9_runUMAP.cwl (CommandLineTool)
loadData	tools/1_loadData.cwl (CommandLineTool)
scaleData	tools/5_Scaling.cwl (CommandLineTool)
filterData	tools/2_filter.cwl (CommandLineTool)
clusterData	tools/8_clusterData.cwl (CommandLineTool)
findFeatures	tools/4_featureSelection.cwl (CommandLineTool)
findNeighbors	tools/7_findNeighbors.cwl (CommandLineTool)
normalizeData	tools/3_normalization.cwl (CommandLineTool)
findAllMarkers	tools/11_findMarkers.cwl (CommandLineTool)

ID	Type	Label	Doc
runPCAPlot1	File
runPCAPlot2	File
runPCAPlot3	File
loadDataPlot	File
runPCAOutput	File
runTSNEOutput	File
runUMAPOutput	File
filterDataPlot	File
loadDataOutput	File
scaleDataOutput	File
filterDataOutput	File
findFeaturesPlot	File
clusterDataOutput	File
findMarkersOutput	File
runUMAPOutputPlot	File
findFeaturesOutput	File
findNeighborsOutput	File
normalizeDataOutput	File