Workflow: steps.cwl

Fetched 2022-10-03 01:54:38 GMT
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Inputs

ID Type Title Doc
k String
margin String
matrix File
num_bin String
pattern String
runPCAR File
verbose String
barcodes File
clip_max String
features File
minCells Integer
runTSNER File
runUmapR File
loadDataR File
block_size String
loess_span String
scaleDataR File
filterDataR File
minFeatures Integer
projectName String
clusterDataR File
nCountRNAmax String
nCountRNAmin String
num_features String
percentMTmax String
percentMTmin String
running_step Integer
scale_factor String
find_markersR File
binning_method String
findNeighborsR File
nFeatureRNAmax String
nFeatureRNAmin String
normalizeDataR File
neighbors_method String
selection_method String
normalization_method String
featureSelectionDataR File

Steps

ID Runs Label Doc
runPCA
tools/6_PCA.cwl (CommandLineTool)
runTSNE
tools/10_runTSNE.cwl (CommandLineTool)
runUMAP
tools/9_runUMAP.cwl (CommandLineTool)
loadData
tools/1_loadData.cwl (CommandLineTool)
scaleData
tools/5_Scaling.cwl (CommandLineTool)
filterData
tools/2_filter.cwl (CommandLineTool)
clusterData
tools/8_clusterData.cwl (CommandLineTool)
findFeatures
tools/4_featureSelection.cwl (CommandLineTool)
findNeighbors
tools/7_findNeighbors.cwl (CommandLineTool)
normalizeData
tools/3_normalization.cwl (CommandLineTool)
findAllMarkers
tools/11_findMarkers.cwl (CommandLineTool)

Outputs

ID Type Label Doc
runPCAPlot1 File
runPCAPlot2 File
runPCAPlot3 File
loadDataPlot File
runPCAOutput File
runTSNEOutput File
runUMAPOutput File
filterDataPlot File
loadDataOutput File
scaleDataOutput File
filterDataOutput File
findFeaturesPlot File
clusterDataOutput File
findMarkersOutput File
runUMAPOutputPlot File
findFeaturesOutput File
findNeighborsOutput File
normalizeDataOutput File
Permalink: https://w3id.org/cwl/view/git/f44e9e11a65a7a04400f963467f249054c95a92d/steps.cwl