Workflow: chip_qc.cwl
Fetched 2023-01-04 04:32:08 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam | File | ||
| sample_id | String | ||
| is_paired_end | Boolean | ||
| user_def_fragment_size | Integer (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| qc_plot_coverage |
../tools/deeptools_plotCoverage.cwl
(CommandLineTool)
|
||
| qc_plot_fingerprint |
../tools/deeptools_plotFingerprint.cwl
(CommandLineTool)
|
||
| qc_phantompeakqualtools |
../tools/phantompeakqualtools.cwl
(CommandLineTool)
|
||
| fragment_size_decision_maker |
../tools/frag_size_decision_maker.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| fragment_size | Integer (Optional) | ||
| qc_crosscorr_plot | File (Optional) | ||
| qc_crosscorr_summary | File (Optional) | ||
| qc_plot_coverage_tsv | File | ||
| qc_plot_coverage_plot | File | ||
| qc_plot_fingerprint_tsv | File (Optional) | ||
| qc_plot_fingerprint_plot | File (Optional) | ||
| qc_plot_fingerprint_stderr | File | ||
| qc_phantompeakqualtools_stderr | File (Optional) | ||
| qc_phantompeakqualtools_stdout | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/57f0e832ce1488ba0e4c8345554940e7b2472287/CWL/workflow_modules/chip_qc.cwl
