Workflow: Add snv and indel bam-readcount files to a vcf

Fetched 2024-11-25 23:51:56 GMT
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Inputs

ID Type Title Doc
vcf File
data_type
sample_name String
snv_bam_readcount_tsv File
indel_bam_readcount_tsv File

Steps

ID Runs Label Doc
add_snv_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf
add_indel_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf

Outputs

ID Type Label Doc
annotated_bam_readcount_vcf File
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/656d9ae18f164f983c5672bcf51037cd73309f4f/subworkflows/vcf_readcount_annotator.cwl