Workflow: Create target and anti-target files for CNA analysis
Fetched 2024-11-24 10:54:07 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| ref_flat | File | ||
| reference | File | ||
| capture_targets | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| create_access_regions |
../tools/cnvkit_access_regions.cwl
(CommandLineTool)
|
Run cnvkit access command | |
| create_target_regions |
../tools/cnvkit_target.cwl
(CommandLineTool)
|
CNVkit target | |
| create_antitarget_regions |
../tools/cnvkit_antitarget.cwl
(CommandLineTool)
|
CNVkit antitarget |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| targets | File | ||
| anti_targets | File |
Permalink:
https://w3id.org/cwl/view/git/656d9ae18f164f983c5672bcf51037cd73309f4f/subworkflows/cnvkit_prep_regions.cwl
