Workflow: Calculate reference coverage
Fetched 2025-04-02 23:15:14 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| targets | File | ||
| reference | File | ||
| anti_targets | File | ||
| panel_of_normal_bams | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| target_reference_coverage |
../tools/cnvkit_coverage.cwl
(CommandLineTool)
|
CNVkit coverage | |
| combine_reference_coverage |
../tools/cnvkit_reference.cwl
(CommandLineTool)
|
CNVkit reference | |
| antitarget_reference_coverage |
../tools/cnvkit_coverage.cwl
(CommandLineTool)
|
CNVkit coverage |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| reference_coverage | File |
Permalink:
https://w3id.org/cwl/view/git/656d9ae18f164f983c5672bcf51037cd73309f4f/subworkflows/cna_reference_coverage.cwl
