Workflow: msa.cwl
Fetched 2024-11-24 23:40:06 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| new_obj | File | ||
| old_obj | File | ||
| job_config | File | ||
| sequences_prefix | String | ||
| sequences_coverage_filter_prefix | String | ||
| sequences_identity_filter_prefix | String | ||
| sequences_clustering_filter_prefix | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| msa |
msa/msa.cwl
(CommandLineTool)
|
||
| blast |
msa/blast.cwl
(CommandLineTool)
|
||
| clustalo |
msa/clustalo.cwl
(CommandLineTool)
|
||
| usearch1 |
msa/usearch1.cwl
(CommandLineTool)
|
||
| usearch2 |
msa/usearch2.cwl
(CommandLineTool)
|
||
| blast_ids |
msa/blast_ids.cwl
(CommandLineTool)
|
||
| msa_parse |
msa/msa_parse.cwl
(CommandLineTool)
|
||
| blast_extract |
msa/blast_extract.cwl
(CommandLineTool)
|
||
| save_sequences |
msa/save_sequences.cwl
(CommandLineTool)
|
||
| blast_sequences |
msa/blast_sequences.cwl
(CommandLineTool)
|
||
| filter_coverage |
msa/filter_coverage.cwl
(CommandLineTool)
|
||
| filter_identity |
msa/filter_identity.cwl
(CommandLineTool)
|
||
| filter_clustering |
msa/filter_clustering.cwl
(CommandLineTool)
|
||
| msa_set_minimized |
msa/msa_set_minimized.cwl
(CommandLineTool)
|
||
| save_sequences_coverage_filtered |
msa/save_sequences.cwl
(CommandLineTool)
|
||
| save_sequences_identity_filtered |
msa/save_sequences.cwl
(CommandLineTool)
|
||
| save_sequences_clustering_filtered |
msa/save_sequences.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| msa_conf | File | ||
| msa_objs | File[] | ||
| blast_xmls | File[] | ||
| msa_queries | File[] | ||
| new_msa_obj | File | ||
| old_msa_obj | File | ||
| blast_ids_ids | File[] | ||
| msa_factories | File[] | ||
| usearch1_objs | File[] | ||
| usearch2_objs | File[] | ||
| blast_id_sequences | File[] | ||
| blast_full_sequences | File[] | ||
| blast_saved_sequences | File[] | ||
| blast_sequences_sequences | File[] | ||
| filter_coverage_seqeunces | File[] | ||
| filter_identity_sequences | File[] | ||
| filter_clustering_sequences | File[] | ||
| filter_coverage_seqeunces_saved | File[] | ||
| filter_identity_sequences_saved | File[] | ||
| filter_clustering_sequences_saved | File[] |
Permalink:
https://w3id.org/cwl/view/git/a2b0c18f117dcf2b0d7e33c59c0f180b6a9bf709/msa.cwl
