Workflow: fireprot.cwl
Fetched 2023-01-03 19:00:10 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| pdb | File | ||
| job_config | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| btc |
btc.cwl
(CommandLineTool)
|
||
| msa |
msa.cwl
(Workflow)
|
||
| output |
output.cwl
(Workflow)
|
||
| stability |
stability.cwl
(Workflow)
|
||
| cmanalysis |
cmanalysis.cwl
(Workflow)
|
||
| preparation |
preparation.cwl
(Workflow)
|
||
| multimutants |
multimutants.cwl
(Workflow)
|
||
| conservation_analysis |
conservation_analysis.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| msa_conf | File | ||
| msa_objs | File[] | ||
| output_pdf | File | ||
| output_tex | File | ||
| btc_new_obj | File | ||
| msa_new_obj | File | ||
| msa_old_obj | File | ||
| msa_queries | File[] | ||
| msa_factories | File[] | ||
| msa_blast_xmls | File[] | ||
| cmanalysis_csvs | File[] | ||
| cmanalysis_fodors | File[] | ||
| msa_blast_ids_ids | File[] | ||
| msa_usearch1_objs | File[] | ||
| msa_usearch2_objs | File[] | ||
| cmanalysis_new_obj | File | ||
| cmanalysis_old_obj | File | ||
| preparation_map_new | File | ||
| preparation_map_old | File | ||
| conservation_new_obj | File | ||
| msa_blast_id_sequences | File[] | ||
| preparation_hetatm_pdb | File | ||
| preparation_renumbered | File | ||
| cmanalysis_freecontacts | File[] | ||
| preparation_foldx_fxout | File | ||
| preparation_map_indexes | File | ||
| stability_stability_new | File | ||
| msa_blast_full_sequences | File[] | ||
| multimutants_btc_wt_traj | File | ||
| preparation_foldx_repair | File | ||
| msa_blast_saved_sequences | File[] | ||
| cmanalysis_amic_parser_old | File | ||
| preparation_filter_min_cst | File | ||
| cmanalysis_freecontacts_dca | File[] | ||
| multimutants_btc_pdb_update | File | ||
| multimutants_energy_wt_traj | File | ||
| stability_foldx_averages_zip | File | ||
| msa_blast_sequences_sequences | File[] | ||
| msa_filter_coverage_seqeunces | File[] | ||
| msa_filter_identity_sequences | File[] | ||
| multimutants_combined_wt_traj | File | ||
| multimutants_multimutants_new | File | ||
| preparation_minimize_rossetta | File | ||
| cmanalysis_amic_round1_outputs | File[] | ||
| cmanalysis_amic_round2_outputs | File[] | ||
| cmanalysis_amic_round3_outputs | File[] | ||
| multimutants_btc_multi_mut_txt | File | ||
| multimutants_energy_pdb_update | File | ||
| msa_filter_clustering_sequences | File[] | ||
| multimutants_btc_rosetta_stderr | File | ||
| multimutants_btc_rosetta_stdout | File | ||
| preparation_minimize_renumbered | File | ||
| stability_btc_mutations_txt_zip | File | ||
| stability_foldx_individuals_zip | File | ||
| multimutants_combined_pdb_update | File | ||
| multimutants_btc_repacked_pdb_zip | File | ||
| multimutants_energy_multi_mut_txt | File | ||
| stability_btc_ddg_predictions_zip | File | ||
| multimutants_btc_mutations_pdb_zip | File | ||
| multimutants_energy_rosetta_stderr | File | ||
| multimutants_energy_rosetta_stdout | File | ||
| stability_energy_mutations_txt_zip | File | ||
| stability_single_mutations_txt_zip | File | ||
| msa_filter_coverage_seqeunces_saved | File[] | ||
| msa_filter_identity_sequences_saved | File[] | ||
| multimutants_combined_multi_mut_txt | File | ||
| multimutants_btc_ddg_predictions_out | File | ||
| multimutants_combined_rosetta_stderr | File | ||
| multimutants_combined_rosetta_stdout | File | ||
| multimutants_energy_repacked_pdb_zip | File | ||
| stability_combined_mutations_txt_zip | File | ||
| stability_energy_ddg_predictions_zip | File | ||
| stability_single_ddg_predictions_zip | File | ||
| msa_filter_clustering_sequences_saved | File[] | ||
| multimutants_energy_mutations_pdb_zip | File | ||
| multimutants_combined_repacked_pdb_zip | File | ||
| stability_combined_ddg_predictions_zip | File | ||
| multimutants_combined_mutations_pdb_zip | File | ||
| multimutants_energy_ddg_predictions_out | File | ||
| multimutants_combined_ddg_predictions_out | File |
Permalink:
https://w3id.org/cwl/view/git/a2b0c18f117dcf2b0d7e33c59c0f180b6a9bf709/fireprot.cwl
