Workflow: snp_callers_workflow.cwl
A workflow for running MuSe, MuTect, SomaticSniper, and Pindel. See [the github repository](https://github.com/BD2KGenomics/dockstore_workflow_snps) for details.
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
CPUS | Integer | ||
MODE | String | ||
GENO_FA | File | ||
DBSNP_VCF | File | ||
TUMOR_BAM | File | ||
COSMIC_VCF | File | ||
NORMAL_BAM | File | ||
CENTROMERE_BED | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
tar |
tar.cwl
(CommandLineTool)
|
||
muse |
muse.cwl
(CommandLineTool)
|
MuSE | |
mutect |
mutect.cwl
(CommandLineTool)
|
MuTect | |
pindel |
pindel.cwl
(CommandLineTool)
|
Pindel-Somatic | |
muse_filter |
muse_filter.cwl
(CommandLineTool)
|
Filter MuSE | |
somaticsniper |
somatic_sniper.cwl
(CommandLineTool)
|
SomaticSniper |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
OUTPUT | File |
Permalink:
https://w3id.org/cwl/view/git/8c8217b63d16c13924a00408e2b621d888b0aaa5/snp_callers_workflow.cwl