Workflow: cnv.cwl
Fetched 2025-12-14 13:14:32 GMT
Verified with cwltool version 3.1.20221201130942
Copynumber variation workflow, runs ADTEx and Varscan
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| TARGETS | File | ||
| SAMPLE_ID | String | ||
| TUMOR_BAM | File | ||
| GENO_FA_GZ | File | ||
| NORMAL_BAM | File | ||
| CENTROMERES | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| zcat |
zcat.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| ADTEX_OUTCNV | File | ||
| VARSCAN_OUTCNV | File |
Permalink:
https://w3id.org/cwl/view/git/2f67aa380fbbae119256c0d6d6ad6023c79aaa98/cnv.cwl
