Workflow: fastqc_star_samtools.cwl
Fetched 2023-01-10 01:45:40 GMT
Verified with cwltool version 3.1.20221201130942
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- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| ref_genome | Directory | ||
| rna_reads_human | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| mapping_reads |
bio-cwl-tools/STAR/STAR-Align.cwl
(CommandLineTool)
|
||
| index_alignment |
bio-cwl-tools/samtools/samtools_index.cwl
(CommandLineTool)
|
Indexing BAM. |
|
| quality_control |
bio-cwl-tools/fastqc/fastqc_2.cwl
(CommandLineTool)
|
Tool runs FastQC from Babraham Bioinformatics |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| qc_html | File | ||
| bam_sorted_indexed | File |
Permalink:
https://w3id.org/cwl/view/git/4058d6e7da1f652c4a60fd7d35c8cf396b5285e2/fastqc_star_samtools.cwl
