Workflow: hi-c-processing-parta-juicer.cwl

Fetched 2019-05-20 00:28:52 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
nsplit Integer (Optional)
fastq2 File
fastq1 File
restriction_file File (Optional)
ncores Integer (Optional)
reference_fasta File (Optional)
bwa_index File
chrsizes File (Optional)
max_remove_mapq Integer (Optional)

Steps

ID Runs Label Doc
juicer
juicer.cwl (CommandLineTool)
juicer2pairs
juicer2pairs.cwl (CommandLineTool)

Outputs

ID Type Label Doc
merged_nodups File (Optional)
out_pairs_index File (Optional)
out_pairs File (Optional)
Permalink: https://w3id.org/cwl/view/git/c0c0aba5d8f23c49c2a47317b4b6ac994f00ea59/cwl_awsem_v1/hi-c-processing-parta-juicer.cwl