- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
fastq | File | ||
winsize | Integer | ||
bwaIndex | File | ||
nthreads | Integer | ||
chromsizes | File | ||
memperthread | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
clip |
clip.cwl
(CommandLineTool)
|
||
align |
align.cwl
(CommandLineTool)
|
||
count |
count.cwl
(CommandLineTool)
|
||
dedup |
dedup.cwl
(CommandLineTool)
|
||
filtersort |
filtersort.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
count_bg | File | ||
dedup_qc_report | File | ||
filtered_sorted_deduped_bam | File |
Permalink:
https://w3id.org/cwl/view/git/c0c0aba5d8f23c49c2a47317b4b6ac994f00ea59/cwl_awsem_v1/repliseq/repliseq-parta.cwl