- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
nres | Integer | ||
maxmem | String | ||
nofrag | Boolean | ||
higlass | Boolean | ||
min_res | Integer | ||
nthreads | Integer | ||
chunksize | Integer | ||
chromsizes | File | ||
custom_res | String | ||
juicer_res | Boolean | ||
input_pairs | File[] (Optional) | ||
max_split_cooler | Integer | ||
restriction_file | File (Optional) | ||
mapqfilter_juicer | Integer |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
cooler |
cooler.cwl
(CommandLineTool)
|
||
pairs2hic |
pairs2hic.cwl
(CommandLineTool)
|
||
cool2mcool |
cool2mcool.cwl
(CommandLineTool)
|
||
merge-pairs |
merge-pairs.cwl
(CommandLineTool)
|
||
addfragtopairs |
addfragtopairs.cwl
(CommandLineTool)
|
||
add-hic-normvector-to-mcool |
add-hic-normvector-to-mcool.cwl
(CommandLineTool)
|
||
extract-mcool-normvector-for-juicebox |
extract-mcool-normvector-for-juicebox.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
hic | File | ||
mcool | File | ||
merged_pairs | File | ||
cooler_normvector | File |
Permalink:
https://w3id.org/cwl/view/git/91d67820264c8ebac829174cb1d0c7c5e30c613f/cwl_awsem_v1/hi-c-processing-pairs.cwl