Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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merge and annotate svs with population allele freq
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 70e05adeda8b3b4c77b8947266684ce4305db6ac |
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Unaligned BAM to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775 |
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collate_unique_SSU_headers.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 2104dc36c775de93de3fef77e7f82a19da76b6e3 |
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facet_subtract.cwl
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https://git.astron.nl/RD/VLBI-cwl.git
Path: workflows/facet_subtract.cwl Branch/Commit ID: 0e6eea3d7afbcc7cc1ee46f6b91bc37f73c32ce4 |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 0e913979ac4a989a482211dfdf6fe204d26b05ab |
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dp3_prep_targ.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/linc_target/dp3_prep_targ.cwl Branch/Commit ID: cff7fed6aa41fb1ccacd5235dec289b4e7ef70eb |
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md5sum_v11.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/md5sum_v11.cwl Branch/Commit ID: 141048ae4b78aa765782bb752be4a1550edc2eea |
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contaminant_cleanup
This workflow detect and remove contamination from a DNA fasta file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Contamination/fastq-contaminant-cleanup.cwl Branch/Commit ID: e1c19e64f6fc210f65472ee227786d33c9b4909a |
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Whole genome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622 |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: a28a8077a8c4dbf117d16799807483a2532af3f3 |
