Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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env-wf1.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/env-wf1.cwl Branch/Commit ID: master |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: dev |
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Transcripts annotation workflow
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https://github.com/stain/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: avoid-spaces |
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analysis for assembled sequences
rna / protein - qc, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/assembled.workflow.cwl Branch/Commit ID: master |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines2-wf.cwl Branch/Commit ID: master |
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Exome QC workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: master |
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Nanopore Quality Control and Filtering
**Workflow for nanopore read quality control and contamination filtering.** - FastQC before filtering (read quality control) - Kraken2 taxonomic read classification - Minimap2 read filtering based on given references - FastQC after filtering (read quality control) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_nanopore_quality.cwl Branch/Commit ID: master |
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pindel parallel workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: e1b0fce |
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03-quantification.cwl
DNase-seq 03 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/DNase-seq_pipeline/03-quantification.cwl Branch/Commit ID: master |
