Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: f993cad |
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LSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: f6b5196 |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 708fd97 |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open reference otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/OPENrefcluster2plot.cwl Branch/Commit ID: master |
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ProGENI
network-guided gene prioritization method implementation by KnowEnG that ranks gene measurements by their correlation to observed phenotypes |
https://github.com/KnowEnG/cwl-gene-prioritization.git
Path: gp_workflow.cwl Branch/Commit ID: master |
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transform.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: 1.1 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: low-vaf |
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TAP 0.9
todo |
https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/relabel-and-merge.cwl Branch/Commit ID: master |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.0.9 |
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topmed-alignment-checker.cwl
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https://github.com/stain/topmed-workflows.git
Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl Branch/Commit ID: namespaces |
