Explore Workflows
View already parsed workflows here or click here to add your own
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 1b0851e |
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mito_cleanup
This workflow detect and remove Mitochondrial from a DNA fasta file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Contamination/mitochondrial-cleanup.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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ACTseq_spike_in.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflows/ACTseq_spike_in.cwl Branch/Commit ID: master |
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trim-rnaseq-se-dutp.cwl
Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se-dutp.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3168316 |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 8a00eb4 |
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env-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/env-wf1.cwl Branch/Commit ID: master |
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wf-alignment.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-alignment.cwl Branch/Commit ID: master |
