Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 3bd060365f24a480b04951a3a75da807d42f010f |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/Barski-lab/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: 749460273e6c8d9e8b7d2395f0ac157701d3495e |
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811-12.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/811-12.cwl Branch/Commit ID: 74a08ca0e90a223f98fdec73c88f36d783a4dde0 |
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iwdr_with_nested_dirs.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl Branch/Commit ID: a0f7d43bbc706af2a844be93fc19b2e4e4da626c |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 88f1e02b261bf9ce882eba306b6245c64328632b |
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wffail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/wffail.cwl Branch/Commit ID: 9b603df77aeb586d122daa2c6c6b1ae40cd54f21 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 13b411d94a568e52797ba936732dc65f1a91bd41 |
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ani.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: ani.cwl Branch/Commit ID: 4def84df33963fc9ac9d5c5f804b911d01a0d9ad |
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step-valuefrom3-wf_v1_1.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step-valuefrom3-wf_v1_1.cwl Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 163fd2d93604a914ddbd0bf623ed3bee6d065442 |
