Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Per-region pindel

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: fa86fce
workflow graph Replace legacy AML Trio Assay

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/aml_trio_cle.cwl

Branch/Commit ID: downsample_and_recall
workflow graph gather AML trio outputs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/aml_trio_cle_gathered.cwl

Branch/Commit ID: downsample_and_recall
workflow graph pcawg_oxog_wf.cwl

This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: pcawg_oxog_wf.cwl

Branch/Commit ID: master
workflow graph SetParameterFromExternal

Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert).

 https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/SetParameterFromExternal.cwl

Branch/Commit ID: main
workflow graph repliseq-parta.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/repliseq/repliseq-parta.cwl

Branch/Commit ID: master
workflow graph checker_workflow_wrapping_tool.cwl

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_tool.cwl

Branch/Commit ID: develop
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/andurill/access-pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph 02-trim-pe.cwl

RNA-seq 02 trimming - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: master