Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: main
workflow graph main.cwl

https://github.com/ska-sa/den.git

Path: cwl/main.cwl

Branch/Commit ID: master
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 8e196ab
workflow graph optimal-pipeline-xml.cwl

https://github.com/MaastrichtU-IDS/OptimAL.git

Path: workflow/optimal-pipeline-xml.cwl

Branch/Commit ID: master
workflow graph LSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: d4e5e53
workflow graph bams2gvcf.woBQSR_male.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_male.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: a8abd0e
workflow graph 02-trim-se.cwl

ATAC-seq 02 trimming - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: v1.0
workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: c1f8b22
workflow graph biowardrobe_chipseq_se.4.cwl

{'extract_fastq': 'http://218.77.58.141:9619','extract_fastq2': 'http://218.77.58.141:9619','extract_fastq3': 'http://121.46.19.86:9619','extract_fastq4': 'http://121.46.19.86:9619', 'fastx_quality_stats': 'http://218.77.58.141:9619','fastx_quality_stats2': 'http://218.77.58.141:9619','fastx_quality_stats3': 'http://121.46.19.86:9619','fastx_quality_stats4': 'http://121.46.19.86:9619','bowtie_aligner': 'http://218.77.58.141:9619','bowtie_aligner2': 'http://218.77.58.141:9619', 'bowtie_aligner3': 'http://121.46.19.86:9619', 'bowtie_aligner4': 'http://121.46.19.86:9619', 'samtools_sort_index': 'http://218.77.58.141:9619','samtools_sort_index2': 'http://218.77.58.141:9619','samtools_sort_index3': 'http://121.46.19.86:9619','samtools_sort_index4': 'http://121.46.19.86:9619', 'samtools_rmdup': 'http://218.77.58.141:9619', 'samtools_rmdup2': 'http://218.77.58.141:9619', 'samtools_rmdup3': 'http://121.46.19.86:9619', 'samtools_rmdup4': 'http://121.46.19.86:9619', 'samtools_sort_index_after_rmdup': 'http://218.77.58.141:9619', 'samtools_sort_index_after_rmdup2': 'http://218.77.58.141:9619', 'samtools_sort_index_after_rmdup3': 'http://121.46.19.86:9619', 'samtools_sort_index_after_rmdup4': 'http://121.46.19.86:9619', 'macs2_callpeak': 'http://218.77.58.141:9619', 'macs2_callpeak2': 'http://218.77.58.141:9619','macs2_callpeak3': 'http://121.46.19.86:9619','macs2_callpeak4': 'http://121.46.19.86:9619', 'get_stat': 'http://218.77.58.141:9619', 'get_stat2': 'http://218.77.58.141:9619', 'get_stat3': 'http://121.46.19.86:9619', 'get_stat4': 'http://121.46.19.86:9619', 'island_intersect': 'http://218.77.58.141:9619', 'island_intersect2': 'http://218.77.58.141:9619', 'island_intersect3': 'http://121.46.19.86:9619', 'island_intersect4': 'http://121.46.19.86:9619', 'average_tag_density': 'http://218.77.58.141:9619', 'average_tag_density2': 'http://218.77.58.141:9619', 'average_tag_density3': 'http://121.46.19.86:9619', 'average_tag_density4': 'http://121.46.19.86:9619' }

 https://github.com/liuzhiyonggd/ga4gh.git

Path: biowardrobe_chipseq_se.4.cwl

Branch/Commit ID: main