Explore Workflows
View already parsed workflows here or click here to add your own
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 6d04f5d65d1d4893706d9ae7e27341633333054f |
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1st-workflow.cwl
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Path: tests/wf/1st-workflow.cwl Branch/Commit ID: d7c4d48fcd1aef2cae7ba31445e73d59b377e978 |
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step_valuefrom5_wf_v1_2.cwl
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Path: testdata/step_valuefrom5_wf_v1_2.cwl Branch/Commit ID: 917a880e3a48c2ea7da10aeae20f9a03fb1c6a62 |
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process_dl0_dl1_multiple.cwl
Process multiple dl0 files using process_dl0_dl1 and then merge the individual result files into one common output file using the merge tool. This is useful for processing simulation files in DIRAC as processing a single file per DIRAC job would result in very many, very short jobs that are not ideal for the workflow management system. |
Path: datapipe/process_dl0_dl1_multiple.cwl Branch/Commit ID: dd3caa2466f23e1d0fb1c641524e9a660b5f0ccf |
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count-lines7-wf.cwl
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Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl Branch/Commit ID: bfe56f3138e9e6fc0b9b8c06447553d4cea03d59 |
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SV filtering workflow
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Path: definitions/subworkflows/filter_sv_vcf.cwl Branch/Commit ID: f7ac3eff79128831c9f7a565d5b187882f39aa58 |
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finalize.cwl
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Path: workflows/linc_target/finalize.cwl Branch/Commit ID: 1e91001f761abbddeb2c9f4528ed4cec41d113f3 |
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Nested workflow example
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Path: tests/wf/nested.cwl Branch/Commit ID: 135a0c67afd67383c44e89fba136ccd9ce6afb1f |
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facets
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Path: setup/cwl/facets.cwl Branch/Commit ID: 45f7695e28fa2185944fd220834eeac2e27d53c7 |
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Detect Variants workflow for WGS pipeline
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Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b |
