Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: low-vaf
workflow graph count-lines3-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines3-wf.cwl

Branch/Commit ID: master
workflow graph canine_deepvariant_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_deepvariant_module.cwl

Branch/Commit ID: master
workflow graph PGAP Pipeline

https://github.com/slottad/pgap.git

Path: wf_pgap.cwl

Branch/Commit ID: master
workflow graph pangenome-generate.cwl

https://github.com/arvados/bh20-seq-resource.git

Path: workflows/pangenome-generate/pangenome-generate.cwl

Branch/Commit ID: master
workflow graph Chipseq alignment with qc and creating homer tag directory

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/chipseq.cwl

Branch/Commit ID: master
workflow graph Detect Variants workflow for WGS pipeline

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_wgs.cwl

Branch/Commit ID: master
workflow graph bqsr-flow.cwl

Run BQSR pre+post+plot flow

 https://github.com/sentieon/sentieon-cwl.git

Path: stage/bqsr-flow.cwl

Branch/Commit ID: master
workflow graph pindel parallel workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/pindel.cwl

Branch/Commit ID: master
workflow graph chksum_for_corrupted_files.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_corrupted_files.cwl

Branch/Commit ID: 0.5.0_test