Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ug-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/ug-distr.cwl Branch/Commit ID: master |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.5.0_test |
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Conversion and compression of RDF files
Workflow to convert a RDF file to the HDT format and GZIP compress it for long term storage |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_toHDT_compression.cwl Branch/Commit ID: master |
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duplicated_readgroup_fix.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/duplicated_readgroup_fix.cwl Branch/Commit ID: master |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 3f85843 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5833078 |
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linc_calibrator.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/linc_calibrator.cwl Branch/Commit ID: master |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/Barski-lab/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: master |
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snaptools_create_snap_file.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: 5465f66 |
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Apply filters to VCF file
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: master |
