Explore Workflows

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/sum-wf.cwl

Branch/Commit ID: master

Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_rescue_ratio_1input.cwl

Branch/Commit ID: master

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-00-prepare-reference-data.cwl

Branch/Commit ID: gatk4-fixes

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/bespin-workflows/16s-qiime2.git

Path: 16s-step2-dada2-paired.cwl

Branch/Commit ID: develop

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/PerformanceSummaryGenome_v0_1_0.cwl

Branch/Commit ID: master

Single-cell Multiome ATAC and RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell Multiome ATAC and RNA-Seq datasets.

https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-analyze-wf.cwl

Branch/Commit ID: main

https://github.com/teoloup/nanopore_fusion.git

Path: nanopore_bcr_abl_umi_analysis.cwl

Branch/Commit ID: main

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_magicblast.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: caea457

https://github.com/mr-c/scalability-reproducibility-chapter.git

Path: CWL/workflow.cwl

Branch/Commit ID: CWL