Explore Workflows
View already parsed workflows here or click here to add your own
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 1.30.0 |
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exome alignment with qc
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Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: master |
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alignment_bwa_mem_prod.cwl
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Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_prod.cwl Branch/Commit ID: master |
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call_cnv.cwl
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Path: workflows/subworkflows/call_cnv.cwl Branch/Commit ID: master |
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
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exomeseq-01-preprocessing.cwl
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Path: subworkflows/exomeseq-01-preprocessing.cwl Branch/Commit ID: master |
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qc-assembled.workflow.cwl
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Path: CWL/Workflows/qc-assembled.workflow.cwl Branch/Commit ID: master |
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samples_fillout_workflow.cwl
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Path: cwl/samples_fillout_workflow.cwl Branch/Commit ID: master |
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gp_makeblastdb
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Path: progs/gp_makeblastdb.cwl Branch/Commit ID: master |
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protein annotation
Proteins - predict, filter, cluster, identify, annotate |
Path: CWL/Workflows/protein-filter-annotation.workflow.cwl Branch/Commit ID: master |
