Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: 16dd8ca |
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msi.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/subworkflows/msi.cwl Branch/Commit ID: master |
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BD Rhapsody™ Targeted Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_targeted_1.8.cwl Branch/Commit ID: master Packed ID: main |
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Tumor-Only Detect Variants workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: downsample_and_recall |
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bams2gvcf.wBQSR.multisamples.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.wBQSR.multisamples.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: caea457 |
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icdar2017st-extract-data-all.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/icdar2017st-extract-data-all.cwl Branch/Commit ID: master Packed ID: main |
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hecil.cwl
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https://github.com/Alves-Bruno/hecil-graph.git
Path: hecil.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: caea457 |
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preprocess.cwl
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https://github.com/epigenomics-screw/screw.git
Path: cwl/preprocess.cwl Branch/Commit ID: scatter |
