Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wgs alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: wgs_workflow.cwl Branch/Commit ID: toil_compatibility |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: ce04e2c |
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exomeseq-gatk4-03-organizedirectories.cwl
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https://github.com/duke-gcb/bespin-cwl.git
Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5e82174 |
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wf_get_peaks_scatter_chimeric_se.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_chimeric_se.cwl Branch/Commit ID: master |
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GATKBaseRecalBQSRWorkflow_4_1_3.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/GATKBaseRecalBQSRWorkflow_4_1_3.cwl Branch/Commit ID: master |
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cmsearch-multimodel.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: a8abd0e |
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module-2.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/module-2.cwl Branch/Commit ID: master |
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env-wf2.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/env-wf2.cwl Branch/Commit ID: master |
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5S-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
