Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Run pindel on provided region

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_region.cwl

Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome_mouse.cwl

Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/1st-workflow.cwl

Branch/Commit ID: 5ef2516220cd2ed327ba7966e7d812de969f4eea
workflow graph Subworkflow to allow calling cnvkit with cram instead of bam files

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: f21b6c6f70f01d0fe08193684060161107f0bf59
workflow graph process VCF workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525
workflow graph Replace legacy AML Trio Assay

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/aml_trio_cle.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph Prepare user input

Prepare user input for NCBI-PGAP pipeline

 https://github.com/ncbi/pgap.git

Path: prepare_user_input2.cwl

Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc
workflow graph LHCb MC workflow

This workflow is composed of 2 main steps that should generate 2 types of jobs: * MCSimulation (CommandLineTool): Gauss execution * MCReconstruction (Workflow): Boole, Moore, Brunel and DaVinci executions based on Gauss outputs

https://github.com/aldbr/dirac-cwl-proto.git

Path: test/workflows/lhcb/description.cwl

Branch/Commit ID: 318a6bda1a4b8af1e0762d2f8611ea8f69b08952