Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph qsm_pipeline_v1.cwl

https://github.com/MGuevaraO/qsm_pipeline.git

Path: qsm_pipeline_v1.cwl

Branch/Commit ID: main
workflow graph psortedDefaultParams.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/psortedDefaultParams.cwl

Branch/Commit ID: master
workflow graph qc.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/qc.cwl

Branch/Commit ID: master
workflow graph WGS processing workflow for single sample

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl

Branch/Commit ID: main
workflow graph gatk-4.0.0.0-haplotypecaller.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-haplotypecaller.cwl

Branch/Commit ID: master
workflow graph wgs alignment with qc

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: low-vaf
workflow graph Produce a list of residue-mapped structural domain instances from CATH ids

Retrieve and process the PDB structures corresponding to the CATH superfamily ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/cath_domain_description_file.txt downloaded from CATH and uses SIFTS resource for PDB to UniProt residue Mapping)

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/resmapping_cath_instances_subwf.cwl

Branch/Commit ID: main
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: master
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: f993cad
workflow graph cond-wf-007.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-007.cwl

Branch/Commit ID: main