Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph fasta2taxa-plot

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open reference otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/OPENrefcluster2plot.cwl

Branch/Commit ID: master
workflow graph SetMirrorPanelAlignment

Derive mirror panel alignment parameters from measurements of the optical point-spread functions.

 https://github.com/gammasim/workflows.git

Path: workflows/SetMirrorPanelAlignment.cwl

Branch/Commit ID: main
workflow graph 01-qc-pe.cwl

ATAC-seq 01 QC - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: v1.0
workflow graph Exome QC workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/qc_exome.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph EMG assembly for paired end Illumina

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: caea457
workflow graph Filter single sample sv vcf from paired read callers(Manta/Smoove)

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl

Branch/Commit ID: downsample_and_recall
workflow graph downsample unaligned BAM and align

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/downsampled_alignment.cwl

Branch/Commit ID: downsample_and_recall
workflow graph preprocessAndCluster.cwl

https://github.com/Epigenomics-Screw/Screw.git

Path: cwl/preprocessAndCluster.cwl

Branch/Commit ID: scatter
workflow graph kfdrc_alignment_CramOnly_wf.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kfdrc_alignment_CramOnly_wf.cwl

Branch/Commit ID: dev
workflow graph Single-cell Multiome ATAC and RNA-Seq Aggregate

Single-cell Multiome ATAC and RNA-Seq Aggregate Aggregates data from multiple Single-cell Multiome ATAC and RNA-Seq Alignment experiments

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-aggregate-wf.cwl

Branch/Commit ID: main