Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cram_to_bam workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/cram_to_bam_and_index.cwl

Branch/Commit ID: downsample_and_recall
workflow graph FragPipe: ProteinProphet

This workflow step takes the PeptideProphet output files from the first step containing the peptide validation and calculates the protein inference using ProteinProphet.

 https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe-ProteinProphet/fragpipe-proteinprophet.cwl

Branch/Commit ID: main
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: salmon-rnaseq/steps/salmon-quantification.cwl

Branch/Commit ID: c338cd3
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/david4096/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: develop
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/ome-tiff-pyramid.git

Path: pipeline.cwl

Branch/Commit ID: a063a34
workflow graph bwa_index

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_index.cwl

Branch/Commit ID: master
workflow graph exomeseq-gatk4-03-organizedirectories.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl

Branch/Commit ID: master
workflow graph any-type-compat.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/any-type-compat.cwl

Branch/Commit ID: master
workflow graph seqprep-subwf.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/seqprep-subwf.cwl

Branch/Commit ID: master
workflow graph bam_filtering

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/bam_filtering.cwl

Branch/Commit ID: 3bb03c9b